ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 96915.00 61.10 81.19 98.74 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 10304.00 6.50 8.63 97.83 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 121.00 0.08 0.10 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 751.00 0.47 0.63 57.81 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 19465.00 12.27 16.31 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 3246.00 79.09 2.72 85.9 MIR3142HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 22649.00 91.03 18.97 100.0 SNHG6-204 retained intron hepatocyte (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 39758.00 27.21 33.31 100.0 MIR151A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 90252.00 61.77 75.61 87.28 MIR151A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 5840.00 81.93 4.89 100.0 DENND3-221 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2181.00 2.97 1.83 69.11 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 230.00 0.31 0.19 39.05 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 614.00 0.84 0.51 76.08 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 172.00 0.23 0.14 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 359.00 0.49 0.30 60.95 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 404.00 0.55 0.34 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 317.00 0.43 0.27 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 516.00 0.70 0.43 100.0 WDR74-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 41652.00 86.43 34.89 100.0 HSPA8-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1251.00 28.64 1.05 100.0 SCARNA9-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 421477.00 97.76 353.09 100.0 TAF1D-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1742.00 0.40 1.46 100.0 TAF1D-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2.00 0.25 0.00 100.0 RPS13-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 31420.00 86.08 26.32 100.0 HSPA8-215 retained intron hepatocyte (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 151.00 0.41 0.13 100.0 HSPA8-215 retained intron hepatocyte (In vitro differentiated cells)