ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 209095.00 24.17 175.17 94.54 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1294.00 0.15 1.08 56.56 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 33217.00 85.94 27.83 100.0 GNL3-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 3457.00 8.94 2.90 100.0 GNL3-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 662.00 5.46 0.55 100.0 RPL5-205 retained intron hepatocyte (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 9877.00 81.47 8.27 100.0 RPL5-205 retained intron hepatocyte (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.02 0.00 100.0 RPL5-205 retained intron hepatocyte (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 4727.00 42.60 3.96 100.0 ZBED9-AS1-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 14162.00 93.02 11.86 100.0 RPS3A-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 83456.00 98.77 69.92 100.0 COX7C-203 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 5706.00 2.06 4.78 92.77 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 76146.66 27.53 63.79 34.97 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 883.00 0.32 0.74 100.0 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 180187.47 65.15 150.95 69.49 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 494387.00 72.58 414.18 91.08 RACK1-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 178098.00 26.15 149.20 57.48 RACK1-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 192.00 2.49 0.16 100.0 RNA5SP486-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 4772.00 90.57 4.00 100.0 SCARNA5-201 scaRNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 121.00 0.08 0.10 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 751.00 0.47 0.63 57.81 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 6940.00 4.38 5.81 65.48 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 320.00 0.20 0.27 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2773.00 1.75 2.32 69.2 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 112.00 0.07 0.09 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 1171.00 0.74 0.98 88.05 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)