ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3.73 0.01 0.01 93.24 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 6686.00 63.98 26.43 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 2424.00 23.20 9.58 85.5 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 187.00 1.79 0.74 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 40.00 12.99 0.16 100.0 RPSA-216 retained intron esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 625.00 3.01 2.47 75.21 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 19317.00 92.89 76.36 98.04 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 238.00 91.54 0.94 100.0 HPS4-237 retained intron esophagus squamous epithelium (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 30.00 62.50 0.12 100.0 MEG8-253 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 2.00 1.80 0.01 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1.00 0.90 0.00 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 31.00 27.93 0.12 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 535.00 11.87 2.11 100.0 DNAJC5-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 2918.00 21.38 11.53 100.0 ENST00000707189 TEC esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 255.00 0.22 1.01 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 41433.88 35.10 163.79 38.34 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 18.00 0.02 0.07 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 73.00 0.06 0.29 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 72161.71 61.14 285.25 63.43 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 445.00 0.38 1.76 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 99.00 0.08 0.39 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 188.00 0.16 0.74 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 248.00 0.21 0.98 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 9156.00 11.24 36.19 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 175.00 0.21 0.69 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)