ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 9781.00 2.55 38.66 86.78 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 419.00 0.11 1.66 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1593.00 0.42 6.30 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 163.00 0.04 0.64 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2611.00 0.68 10.32 96.6 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 21.00 3.86 0.08 70.0 SNHG14-323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 40787.00 94.14 161.23 97.39 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 128.00 0.30 0.51 44.29 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 169.00 0.39 0.67 62.36 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 472.00 1.09 1.87 93.84 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 1670.00 70.97 6.60 94.14 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 605.00 25.71 2.39 48.83 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 655.00 78.54 2.59 95.62 SNHG14-341 lncRNA esophagus squamous epithelium (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 830.00 26.56 3.28 100.0 NCL-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 360.00 44.94 1.42 100.0 FMN2-209 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 17.00 0.10 0.07 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 419.00 2.35 1.66 69.03 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 51.00 0.29 0.20 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3941.00 22.07 15.58 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 4.00 0.02 0.02 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 188.00 1.05 0.74 30.97 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 130.00 22.97 0.51 100.0 SNHG10-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 26923.35 71.43 106.43 74.37 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 9626.23 25.54 38.05 39.08 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)