ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 29.00 0.04 0.11 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1291.00 1.58 5.10 82.39 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 69655.00 85.50 275.34 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 32178.00 92.42 127.20 98.58 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 1159.00 3.33 4.58 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 12.00 0.03 0.05 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 2.00 0.01 0.01 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 615.00 79.87 2.43 100.0 B4GALT1-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 245.00 1.37 0.97 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 2968.00 16.62 11.73 81.47 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1325.00 7.42 5.24 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 12.00 40.00 0.05 100.0 MIR34BHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 5895.00 79.74 23.30 84.58 THBS3-AS1-228 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2915.00 54.21 11.52 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1025.00 19.06 4.05 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 27975.00 84.01 110.58 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1145.00 3.44 4.53 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 181.00 0.54 0.72 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 326.00 0.98 1.29 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 7.00 46.67 0.03 100.0 MEG8-261 lncRNA esophagus squamous epithelium (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 148.00 18.14 0.59 100.0 NR2F2-AS1-327 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 604.00 1.39 2.39 41.94 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 22174.00 50.99 87.65 100.0 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 520.00 1.20 2.06 46.26 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 316.00 0.73 1.25 34.35 ENST00000747675 lncRNA esophagus squamous epithelium (Tissue)