ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 364.00 0.03 1.44 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 49034.00 3.72 193.83 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 200.00 0.02 0.79 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 929.00 0.07 3.67 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 77360.00 5.87 305.80 90.89 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 7.00 0.00 0.03 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 142932.00 10.85 565.00 98.17 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 30.00 0.00 0.12 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 34.00 0.00 0.13 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 10188.00 0.77 40.27 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 3817.00 0.29 15.09 89.64 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 296.19 0.02 1.17 35.64 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1342.00 0.10 5.30 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2310.00 0.18 9.13 69.29 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 499.00 0.04 1.97 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 130.00 0.01 0.51 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 414.00 0.03 1.64 100.0 SNHG1-248 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 2914.00 32.83 11.52 100.0 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 3012.00 33.93 11.91 95.65 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 1885.00 21.23 7.45 87.55 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 576.00 0.15 2.28 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 178635.24 46.58 706.14 53.3 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 259.00 0.07 1.02 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 177.00 0.05 0.70 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 186231.20 48.56 736.16 51.93 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)