ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 64.00 0.36 0.25 100.0 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 2938.00 76.09 11.61 100.0 HSPA8-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 141.00 16.93 0.56 100.0 SCARNA9-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 87174.00 97.12 344.60 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 125.00 0.14 0.49 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2631.00 80.04 10.40 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 22.00 0.67 0.09 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 290.00 11.31 1.15 100.0 RPS2-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 121787.00 80.81 481.42 81.93 ENST00000548801 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 455.00 13.52 1.80 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 331.00 9.83 1.31 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 296.00 8.79 1.17 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 50.00 0.89 0.20 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 66.00 1.18 0.26 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 1087.00 19.42 4.30 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 4117.00 73.54 16.27 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1257.00 98.05 4.97 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 484.00 1.24 1.91 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 163.00 0.42 0.64 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 5.00 0.01 0.02 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1470.00 3.77 5.81 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 31283.00 80.27 123.66 97.1 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 2.00 0.00 0.01 100.0 ENST00000563103 lncRNA esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 2136.00 11.87 8.44 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 11229.00 62.42 44.39 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)