ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 319901.00 89.33 1264.56 94.11 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 8493.00 2.37 33.57 60.94 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 826.00 1.02 3.27 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 90.00 0.11 0.36 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 887.00 1.10 3.51 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 51111.00 63.37 202.04 66.18 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 1837.00 39.73 7.26 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 989.00 21.39 3.91 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3501.59 15.90 13.84 28.17 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 9057.04 41.12 35.80 77.23 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 139.00 0.63 0.55 100.0 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 540.00 6.68 2.13 100.0 ENST00000570843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1460.00 85.58 5.77 100.0 MIR497HG-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 29650.00 98.50 117.21 99.06 MIR22HG-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 767.00 1.62 3.03 68.12 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 41695.00 88.11 164.82 91.34 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 359.00 0.76 1.42 31.88 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 159.00 54.64 0.63 100.0 ENST00000578036 lncRNA esophagus squamous epithelium (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 1546.00 89.42 6.11 100.0 RPL23A-207 protein coding esophagus squamous epithelium (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 486.00 95.11 1.92 100.0 MIR744-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 141.00 71.57 0.56 100.0 MIR378C-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2586.00 71.46 10.22 81.04 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 4.00 0.11 0.02 100.0 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 226.00 6.24 0.89 18.42 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 912.01 0.36 3.61 69.57 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)