ENCFF503PBD

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2689.00 41.52 25.50 100.0 GNL3-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 305.00 4.71 2.89 100.0 GNL3-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 1.00 0.03 0.01 100.0 RPL5-205 retained intron mesendoderm (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 2346.00 69.82 22.24 100.0 RPL5-205 retained intron mesendoderm (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 3743.00 15.22 35.49 100.0 ZBED9-AS1-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 389.00 31.05 3.69 100.0 RPS3A-206 retained intron mesendoderm (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 3006.00 52.99 28.50 100.0 COX7C-203 protein coding mesendoderm (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 1154.71 16.91 10.95 54.6 RACK1-229 protein coding mesendoderm (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 929.21 13.60 8.81 43.06 RACK1-229 protein coding mesendoderm (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 347.00 5.08 3.29 39.21 RACK1-229 protein coding mesendoderm (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 10.00 0.15 0.09 100.0 RACK1-229 protein coding mesendoderm (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 817.00 19.64 7.75 90.78 RACK1-230 retained intron mesendoderm (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 105.00 2.52 1.00 49.07 RACK1-230 retained intron mesendoderm (In vitro differentiated cells)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 95.00 4.18 0.90 100.0 RNA5SP486-201 rRNA pseudogene mesendoderm (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1119.00 87.15 10.61 100.0 SCARNA5-201 scaRNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 10.00 0.04 0.09 100.0 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 13458.00 60.15 127.60 94.39 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 83.00 0.37 0.79 78.3 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 3.00 0.01 0.03 100.0 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 187.00 0.84 1.77 32.19 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 895.00 4.00 8.49 98.79 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 30.00 0.13 0.28 100.0 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 1239.00 5.54 11.75 60.77 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 12.00 0.05 0.11 100.0 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 49.00 0.22 0.46 49.0 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)