ENCFF503PBD

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 39.00 0.17 0.37 100.0 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 895.00 4.00 8.49 98.79 RNY4-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 37.00 51.39 0.35 90.24 MIR3142HG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 6.00 0.84 0.06 100.0 SNHG6-204 retained intron mesendoderm (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 124517.00 58.71 1180.59 87.43 MIR151A-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 65735.00 31.00 623.26 100.0 MIR151A-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 2891.00 99.01 27.41 100.0 DENND3-221 protein coding mesendoderm (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 24.00 0.22 0.23 75.0 WDR74-204 protein coding mesendoderm (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1125.00 10.36 10.67 100.0 WDR74-204 protein coding mesendoderm (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 4.00 0.04 0.04 100.0 WDR74-204 protein coding mesendoderm (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 4.00 0.53 0.04 100.0 HSPA8-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 142.00 1.50 1.35 100.0 SCARNA9-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1.00 0.02 0.01 100.0 TAF1D-215 retained intron mesendoderm (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 920.00 15.28 8.72 100.0 TAF1D-215 retained intron mesendoderm (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 19.00 3.50 0.18 100.0 HSPA8-215 retained intron mesendoderm (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1.00 0.06 0.01 100.0 RPS2-215 retained intron mesendoderm (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 832.00 85.68 7.89 92.34 ENST00000548801 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 138.00 6.82 1.31 100.0 ENST00000554988 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 164.00 8.11 1.55 100.0 ENST00000554988 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 1397.00 13.97 13.25 100.0 SNHG14-220 retained intron mesendoderm (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 16.00 0.16 0.15 100.0 SNHG14-220 retained intron mesendoderm (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1264.00 12.64 11.98 100.0 SNHG14-220 retained intron mesendoderm (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 6.00 0.06 0.06 100.0 SNHG14-220 retained intron mesendoderm (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 205.00 95.79 1.94 100.0 TEKT4P2-201 transcribed unprocessed pseudogene mesendoderm (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 234.00 3.38 2.22 95.51 RPL4-202 retained intron mesendoderm (In vitro differentiated cells)