ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 785986.00 87.06 1564.99 88.07 CARMN-209 lncRNA Peyer's patch (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 181.00 62.41 0.36 100.0 PPFIA1P1-201 processed pseudogene Peyer's patch (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 162.00 9.12 0.32 100.0 SNORD114-21-201 snoRNA Peyer's patch (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1269.00 71.41 2.53 100.0 SNORD114-21-201 snoRNA Peyer's patch (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1522.00 98.07 3.03 100.0 MIR98-201 miRNA Peyer's patch (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 12.00 15.58 0.02 100.0 SNORD113-5-201 snoRNA Peyer's patch (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 38.00 63.33 0.08 100.0 MIR15A-201 miRNA Peyer's patch (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 120.00 50.42 0.24 100.0 SNHG21-206 retained intron Peyer's patch (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 21811.00 47.86 43.43 96.92 MIR486-1-201 miRNA Peyer's patch (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 81182.00 87.67 161.64 99.97 NOP56-219 retained intron Peyer's patch (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 520.00 0.56 1.04 100.0 NOP56-219 retained intron Peyer's patch (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 563.00 0.61 1.12 100.0 NOP56-219 retained intron Peyer's patch (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3742.00 4.04 7.45 61.09 NOP56-219 retained intron Peyer's patch (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 18.00 0.16 0.04 100.0 RNA5-8SN2-201 rRNA Peyer's patch (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2786.02 25.31 5.55 41.12 RNA5-8SN2-201 rRNA Peyer's patch (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1019.00 9.26 2.03 100.0 RNA5-8SN2-201 rRNA Peyer's patch (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 3822.19 34.72 7.61 56.41 RNA5-8SN2-201 rRNA Peyer's patch (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 727.00 3.50 1.45 100.0 U2.3-201 snRNA Peyer's patch (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 114.00 0.55 0.23 55.88 U2.3-201 snRNA Peyer's patch (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 10.00 0.05 0.02 100.0 U2.3-201 snRNA Peyer's patch (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 61.00 0.29 0.12 100.0 U2.3-201 snRNA Peyer's patch (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 1058.00 5.09 2.11 100.0 U2.3-201 snRNA Peyer's patch (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1593.00 7.74 3.17 100.0 U2.6-201 snRNA Peyer's patch (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 59.00 0.41 0.12 26.11 ENST00000619323 lncRNA Peyer's patch (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 13675.00 94.93 27.23 96.95 ENST00000619323 lncRNA Peyer's patch (Tissue)