ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 24.00 6.61 0.15 61.54 MIR222HG-206 lncRNA testis (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 40.00 12.86 0.25 100.0 RPSA-216 retained intron testis (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 21851.00 92.48 136.92 98.01 MIR99AHG-370 lncRNA testis (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 847.00 3.58 5.31 78.79 MIR99AHG-370 lncRNA testis (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 863.00 93.91 5.41 100.0 HPS4-237 retained intron testis (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 124.00 87.32 0.78 100.0 MEG8-253 lncRNA testis (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1.00 0.23 0.01 100.0 MEG9-206 lncRNA testis (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 196.00 45.58 1.23 100.0 MEG9-206 lncRNA testis (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 252.00 6.63 1.58 100.0 DNAJC5-203 nonsense mediated decay testis (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 355.00 10.79 2.22 100.0 ENST00000707189 TEC testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 11812.61 23.08 74.02 25.39 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 16.00 0.03 0.10 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 36504.89 71.32 228.73 73.8 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 179.00 0.35 1.12 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 18.00 0.04 0.11 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 24.00 0.05 0.15 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 148.00 0.29 0.93 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 2.00 0.00 0.01 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 9817.00 5.06 61.51 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 367.00 0.19 2.30 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 34.00 0.02 0.21 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1693.00 0.87 10.61 70.57 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 180229.00 92.82 1129.29 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 3.00 0.02 0.02 100.0 SNHG32-227 lncRNA testis (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 17002.00 94.06 106.53 99.28 SNHG32-227 lncRNA testis (Tissue)