ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 263.00 0.02 1.65 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3296.00 6.20 20.65 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 24451.20 46.00 153.21 91.03 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 576.00 1.08 3.61 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 160.00 0.30 1.00 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 119.79 0.23 0.75 0.45 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 5712.00 10.75 35.79 99.93 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 1135.00 2.14 7.11 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1962.00 3.69 12.29 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 404.00 0.76 2.53 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2093.00 0.59 13.11 43.97 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 332553.00 94.19 2083.73 99.63 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 2986.00 0.85 18.71 60.19 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 9710.00 2.75 60.84 91.87 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 7.00 0.00 0.04 100.0 MEG8-251 lncRNA testis (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 23.00 1.33 0.14 100.0 SNHG14-336 lncRNA testis (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 40.00 47.62 0.25 100.0 FMN2-209 protein coding CDS not defined testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 9.00 0.60 0.06 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 44.00 2.94 0.28 29.33 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 71.00 4.74 0.44 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 59.00 3.94 0.37 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 4.00 0.27 0.03 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 106.00 7.07 0.66 70.67 LINC02739-203 lncRNA testis (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 500.00 23.99 3.13 100.0 SNHG10-212 lncRNA testis (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 297.00 81.82 1.86 100.0 MIR222HG-206 lncRNA testis (Tissue)