ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1485.02 0.14 9.30 66.24 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 3514.00 0.33 22.02 79.99 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 783595.00 73.44 4909.90 99.76 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 551.00 0.05 3.45 78.05 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 49037.00 4.60 307.26 98.74 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 3552.00 0.33 22.26 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 58798.00 5.51 368.42 99.91 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 404.00 0.04 2.53 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 27.00 0.00 0.17 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 382.00 0.04 2.39 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 376.00 0.04 2.36 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 262.00 0.02 1.64 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 14085.00 1.32 88.25 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 174.00 0.02 1.09 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 888.00 0.08 5.56 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 48133.00 4.51 301.60 75.96 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 3229.00 0.30 20.23 89.35 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 26.00 0.00 0.16 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 41.00 0.00 0.26 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 7352.00 0.69 46.07 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1893.00 0.18 11.86 73.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 772.56 0.07 4.84 34.46 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 668.00 0.06 4.19 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2348.00 0.22 14.71 60.56 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1362.00 0.13 8.53 100.0 SNHG1-248 lncRNA testis (Tissue)