ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1235.00 0.11 7.74 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 224.00 0.02 1.40 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1999.00 0.18 12.53 79.07 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 24.00 0.00 0.15 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 7.00 0.00 0.04 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 772.00 0.07 4.84 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 902964.00 82.08 5657.85 99.87 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 310.00 0.03 1.94 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2843.00 0.26 17.81 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1161.00 0.11 7.27 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 223.00 0.02 1.40 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 5808.00 0.53 36.39 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 6.00 0.00 0.04 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 350.00 0.03 2.19 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 900.00 0.08 5.64 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 5757.00 0.52 36.07 78.67 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1880.00 0.17 11.78 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 272.00 0.02 1.70 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 92.00 0.01 0.58 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2019.00 0.18 12.65 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 2.00 0.00 0.01 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 21.00 12.07 0.13 100.0 FTX-219 lncRNA testis (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 82.00 47.13 0.51 90.11 FTX-219 lncRNA testis (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 62.00 0.75 0.39 59.62 CTC1-214 protein coding testis (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 99.00 1.19 0.62 83.19 CTC1-214 protein coding testis (Tissue)