ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 28.00 0.21 0.18 100.0 U2.3-201 snRNA testis (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 1236.00 9.45 7.74 100.0 U2.3-201 snRNA testis (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 336.00 2.57 2.11 100.0 U2.3-201 snRNA testis (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 327.00 2.79 2.05 100.0 U2.6-201 snRNA testis (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 12.00 0.16 0.08 23.08 ENST00000619323 lncRNA testis (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 7039.00 96.46 44.11 98.19 ENST00000619323 lncRNA testis (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 458.00 19.95 2.87 100.0 SCARNA4-202 scaRNA testis (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 670.00 86.23 4.20 100.0 ENST00000625572 miRNA testis (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 4081.00 92.90 25.57 100.0 ENST00000630615 snoRNA testis (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 53.00 51.46 0.33 100.0 DMRT2-209 protein coding testis (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 7.00 6.80 0.04 100.0 DMRT2-209 protein coding testis (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 473.00 42.46 2.96 100.0 SNORD98-201 snoRNA testis (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 386.00 34.65 2.42 100.0 SNORD98-201 snoRNA testis (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 36128.21 73.17 226.37 75.43 MIR106AHG-201 lncRNA testis (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 1.70 0.00 0.01 85.2 MIR106AHG-201 lncRNA testis (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 367.00 33.18 2.30 100.0 MEG8-222 lncRNA testis (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 345.00 31.19 2.16 100.0 MEG8-222 lncRNA testis (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 243.00 1.20 1.52 100.0 SNHG14-224 lncRNA testis (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 11930.00 58.77 74.75 92.15 SNHG14-224 lncRNA testis (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 2081.00 10.25 13.04 55.7 SNHG14-224 lncRNA testis (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 711.98 10.02 4.46 53.37 5S_rRNA.20-201 rRNA pseudogene testis (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 3304.00 46.71 20.70 100.0 HSPA9-211 retained intron testis (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 937.00 13.25 5.87 46.76 HSPA9-211 retained intron testis (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 961.00 62.04 6.02 100.0 DNM3OS-205 lncRNA testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 157346.00 14.30 985.91 100.0 GAS5-230 retained intron testis (Tissue)