ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 2284.00 71.85 14.31 76.01 VMP1-217 retained intron testis (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1572.00 30.96 9.85 100.0 C19orf48P-203 retained intron testis (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 157.00 3.09 0.98 100.0 C19orf48P-203 retained intron testis (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 28.00 80.00 0.18 100.0 ENST00000597420 lncRNA testis (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 123931.00 77.32 776.54 78.91 CARMN-209 lncRNA testis (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 152.00 64.14 0.95 100.0 PPFIA1P1-201 processed pseudogene testis (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 3753.00 49.28 23.52 100.0 SNORD114-21-201 snoRNA testis (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 2789.00 36.63 17.48 100.0 SNORD114-21-201 snoRNA testis (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 752.00 98.17 4.71 100.0 MIR98-201 miRNA testis (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 1016.00 82.40 6.37 100.0 SNORD113-5-201 snoRNA testis (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 24.00 92.31 0.15 100.0 MIR15A-201 miRNA testis (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 362.00 52.69 2.27 100.0 SNHG21-206 retained intron testis (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 4778.00 47.50 29.94 97.67 MIR486-1-201 miRNA testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 23077.00 64.78 144.60 99.95 NOP56-219 retained intron testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 637.00 1.79 3.99 100.0 NOP56-219 retained intron testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 338.00 0.95 2.12 100.0 NOP56-219 retained intron testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3379.00 9.49 21.17 35.35 NOP56-219 retained intron testis (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3884.34 29.60 24.34 43.06 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 11.00 0.08 0.07 100.0 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 418.00 3.19 2.62 100.0 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 6.00 0.05 0.04 100.0 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 4998.05 38.08 31.32 55.41 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 5.00 100.00 0.03 100.0 MIR7974-201 miRNA testis (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 177.00 1.35 1.11 100.0 U2.3-201 snRNA testis (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 68.00 0.52 0.43 24.2 U2.3-201 snRNA testis (Tissue)