ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 126657.00 9.63 793.62 91.98 RPL23A-208 retained intron testis (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 2614.65 0.20 16.38 64.27 RPL23A-208 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 60389.00 32.66 378.39 85.61 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 340.00 0.18 2.13 100.0 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 39765.00 21.51 249.16 88.91 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 20856.00 11.28 130.68 82.12 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 58289.00 31.52 365.23 88.08 RPL17-211 retained intron testis (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2.00 40.00 0.01 50.0 ENST00000582320 lncRNA testis (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 8923.00 4.76 55.91 100.0 RPL17-214 retained intron testis (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 124673.66 66.49 781.19 74.77 RPL17-214 retained intron testis (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 27740.02 14.80 173.82 16.55 RPL17-214 retained intron testis (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 2.00 0.00 0.01 100.0 SNORD43-201 snoRNA testis (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 414976.00 98.88 2600.18 99.97 SNORD43-201 snoRNA testis (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 36.00 0.01 0.23 100.0 SNORD43-201 snoRNA testis (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 35.00 38.46 0.22 100.0 MIR151B-201 miRNA testis (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 489.00 5.55 3.06 100.0 SNORD3A-201 snoRNA testis (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 689.00 26.88 4.32 100.0 NSRP1-214 protein coding testis (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1440.00 56.18 9.02 86.12 NSRP1-214 protein coding testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 171.00 31.90 1.07 94.48 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 69.00 12.87 0.43 69.7 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 150.00 27.99 0.94 98.04 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 32.00 5.97 0.20 69.57 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 5.00 19.23 0.03 100.0 ODAD3-204 nonsense mediated decay testis (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 43.00 1.35 0.27 100.0 VMP1-217 retained intron testis (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 9.00 0.28 0.06 100.0 VMP1-217 retained intron testis (Tissue)