ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1906.00 3.77 11.94 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 6064.00 64.02 38.00 100.0 RPL4-207 retained intron testis (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 772.00 8.15 4.84 100.0 RPL4-207 retained intron testis (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 2175.00 78.86 13.63 95.14 ENST00000565336 lncRNA testis (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 235.00 8.52 1.47 76.55 ENST00000565336 lncRNA testis (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1548.00 17.60 9.70 100.0 RBMX-210 retained intron testis (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2212.00 25.14 13.86 100.0 RBMX-210 retained intron testis (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 57.00 0.65 0.36 4.5 RBMX-210 retained intron testis (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 318.00 33.47 1.99 100.0 RPL4-214 retained intron testis (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 619.72 24.51 3.88 43.16 POLG-DT-202 lncRNA testis (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 966.70 38.24 6.06 73.85 POLG-DT-202 lncRNA testis (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 47.00 1.86 0.29 100.0 POLG-DT-202 lncRNA testis (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 54.00 7.11 0.34 100.0 ENST00000570843 lncRNA testis (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 367.00 62.52 2.30 100.0 MIR497HG-207 lncRNA testis (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 4427.00 95.88 27.74 96.81 MIR22HG-212 lncRNA testis (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 22.00 2.75 0.14 100.0 SNORD53B-201 snoRNA testis (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 266.00 33.29 1.67 41.96 SNORD53B-201 snoRNA testis (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 368.00 46.06 2.31 58.04 SNORD53B-201 snoRNA testis (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 43.00 59.72 0.27 100.0 ENST00000578036 lncRNA testis (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 358.00 88.18 2.24 100.0 RPL23A-207 protein coding testis (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 129.00 92.14 0.81 100.0 MIR744-201 miRNA testis (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 8.00 5.03 0.05 10.39 MIR142HG-201 lncRNA testis (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 96.00 60.38 0.60 67.61 MIR142HG-201 lncRNA testis (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 1458.87 0.11 9.14 45.92 RPL23A-208 retained intron testis (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1178907.00 89.61 7386.88 94.19 RPL23A-208 retained intron testis (Tissue)