ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 554.00 26.93 3.47 36.76 SNORD121B-201 snoRNA testis (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 8.00 1.29 0.05 100.0 SNORD127-201 snoRNA testis (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 37.00 5.96 0.23 100.0 SNORD127-201 snoRNA testis (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 6081.00 94.45 38.10 100.0 SNORD42B-201 snoRNA testis (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 27.00 5.06 0.17 100.0 RNY4P25-201 misc RNA testis (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 471.00 81.07 2.95 100.0 SNORD121A-201 snoRNA testis (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5031.00 97.59 31.52 100.0 SNORD126-201 snoRNA testis (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 3.00 1.15 0.02 100.0 SNORD124-201 snoRNA testis (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 298.00 42.63 1.87 100.0 SNHG12-201 retained intron testis (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2143.00 96.62 13.43 100.0 SMC1A-204 retained intron testis (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 203.00 19.30 1.27 100.0 DDX39B-219 retained intron testis (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 294.00 27.95 1.84 100.0 DDX39B-219 retained intron testis (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 644.00 74.97 4.04 100.0 RPS8-206 protein coding CDS not defined testis (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 860.00 18.27 5.39 99.77 RPL13-207 retained intron testis (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1699.00 36.09 10.65 100.0 RPL13-207 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3103.00 1.50 19.44 84.46 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 18407.00 8.91 115.34 84.29 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 4.00 0.00 0.03 100.0 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 156929.00 75.95 983.30 99.16 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 692.00 0.33 4.34 34.6 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 5.00 0.00 0.03 100.0 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 10476.00 5.07 65.64 64.52 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 329.00 0.16 2.06 48.1 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1678.00 0.81 10.51 51.49 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 135.00 0.07 0.85 36.59 EIF4A2-219 retained intron testis (Tissue)