ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 692.00 0.33 4.34 34.6 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 5.00 0.00 0.03 100.0 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 10476.00 5.07 65.64 64.52 EIF4A2-219 retained intron testis (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 6.00 4.26 0.04 100.0 RPS8-207 protein coding CDS not defined testis (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 39.00 4.69 0.24 100.0 RPL7A-206 protein coding CDS not defined testis (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 139.00 16.71 0.87 100.0 RPL7A-206 protein coding CDS not defined testis (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 236.00 28.37 1.48 100.0 RPL7A-206 protein coding CDS not defined testis (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 6.00 0.00 0.04 100.0 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4553.00 0.97 28.53 100.0 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 449185.00 95.69 2814.53 98.58 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 811.00 0.17 5.08 100.0 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 12475.00 2.66 78.17 95.53 RPL21-209 retained intron testis (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 83.00 3.95 0.52 100.0 RPL13A-212 retained intron testis (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 40.00 1.90 0.25 100.0 RPL13A-212 retained intron testis (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 100.00 4.76 0.63 100.0 RPL13A-212 retained intron testis (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 143.00 10.77 0.90 100.0 RPL7A-207 protein coding CDS not defined testis (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 185.00 13.93 1.16 100.0 RPL7A-207 protein coding CDS not defined testis (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 40.00 85.11 0.25 100.0 RGS11-208 retained intron testis (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 17185.00 80.37 107.68 92.72 NOP56-217 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 749.00 4.92 4.69 69.16 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1286.00 8.45 8.06 100.0 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1179.00 7.74 7.39 100.0 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 334.00 2.19 2.09 30.84 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 7785.00 51.13 48.78 93.31 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 173.00 1.14 1.08 100.0 RABGGTB-213 protein coding CDS not defined testis (Tissue)