ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 988.00 2.61 6.19 100.0 SNORD100-201 snoRNA testis (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 1364.00 3.60 8.55 100.0 SNORD100-201 snoRNA testis (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1116.00 66.67 6.99 100.0 SNORD111B-201 snoRNA testis (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 120.00 1.03 0.75 100.0 RNU2-36P-201 snRNA testis (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 674.00 5.76 4.22 100.0 RNU2-36P-201 snRNA testis (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 52138.00 97.25 326.69 99.44 SNORD19C-201 snoRNA testis (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 549.00 1.02 3.44 100.0 SNORD19C-201 snoRNA testis (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 3294.00 73.30 20.64 100.0 SNORD12B-201 snoRNA testis (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 80.00 1.78 0.50 100.0 SNORD12B-201 snoRNA testis (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 2.00 6.90 0.01 100.0 Y_RNA.609-201 misc RNA testis (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 179.00 10.87 1.12 100.0 SNORD71-201 snoRNA testis (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 576.00 34.99 3.61 100.0 SNORD71-201 snoRNA testis (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1166.00 86.43 7.31 95.97 MIR194-2HG-201 lncRNA testis (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 161.00 11.93 1.01 52.96 MIR194-2HG-201 lncRNA testis (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 1.00 4.76 0.01 100.0 RPS7P15-201 processed pseudogene testis (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 651.00 19.75 4.08 100.0 SNORD62B-201 snoRNA testis (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 391.00 11.86 2.45 100.0 SNORD62B-201 snoRNA testis (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 4.00 0.12 0.03 100.0 SNORD62B-201 snoRNA testis (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 839.00 25.46 5.26 83.82 SNORD62B-201 snoRNA testis (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 70.00 94.59 0.44 100.0 MRPL32-203 nonsense mediated decay testis (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 9.00 56.25 0.06 100.0 ENST00000436739 lncRNA testis (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3011.00 55.38 18.87 92.31 TMEM107-204 protein coding testis (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 147.00 2.70 0.92 100.0 TMEM107-204 protein coding testis (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1851.00 85.93 11.60 100.0 SNHG16-201 lncRNA testis (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 39035.00 81.16 244.59 93.86 SNORD105B-201 snoRNA testis (Tissue)