ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 832.00 94.76 6.79 96.52 MIR186-201 miRNA A375 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 1.00 100.00 0.01 100.0 MIR200B-201 miRNA A375 (Cell line)
ENST00000384999.1 ENST00000384999.1_25_46_+ 25–46 7.00 87.50 0.06 100.0 MIR218-1-201 miRNA A375 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 4587.00 92.33 37.44 95.68 MIR181B2-201 miRNA A375 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 8300.00 89.96 67.74 90.6 MIR10B-201 miRNA A375 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 70.79 45.67 0.58 50.56 MIR130B-201 miRNA A375 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 59.32 38.27 0.48 48.62 MIR130B-201 miRNA A375 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 9.00 5.81 0.07 100.0 MIR130B-201 miRNA A375 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 524.53 81.07 4.28 83.39 MIR93-201 miRNA A375 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 92.96 14.37 0.76 18.97 MIR93-201 miRNA A375 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 70.00 84.34 0.57 90.91 MIR532-201 miRNA A375 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 32.00 78.05 0.26 100.0 MIR15B-201 miRNA A375 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 32.00 71.11 0.26 100.0 MIR500A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 35.00 0.43 0.29 40.7 MIR30A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 679.00 8.36 5.54 100.0 MIR30A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 41.00 0.50 0.33 100.0 MIR30A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 7260.00 89.38 59.26 99.3 MIR30A-201 miRNA A375 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 9702.00 93.74 79.19 96.49 MIR27B-201 miRNA A375 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 218.00 2.11 1.78 100.0 MIR27B-201 miRNA A375 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 120.00 86.96 0.98 100.0 MIR196A2-201 miRNA A375 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 16.00 94.12 0.13 100.0 MIR577-201 miRNA A375 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 320.00 96.68 2.61 98.46 MIR204-201 miRNA A375 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 22.00 84.62 0.18 100.0 MIR152-201 miRNA A375 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 23.00 58.97 0.19 100.0 MIR138-1-201 miRNA A375 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 205.00 82.00 1.67 100.0 MIR30C1-201 miRNA A375 (Cell line)