ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 58.00 0.91 0.47 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 76.00 1.50 0.62 77.55 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 3.00 18.75 0.02 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 95.00 17.63 0.78 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 6825.00 89.24 55.70 98.71 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 11.00 0.83 0.09 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 180.00 13.65 1.47 67.16 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 68.00 54.40 0.56 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 1.00 3.23 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 9.00 3.70 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 1032.00 87.38 8.42 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 35.00 85.37 0.29 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 3028.00 61.28 24.71 91.98 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 20.00 0.40 0.16 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 36.00 0.57 0.29 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 78.00 61.42 0.64 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 24.00 5.05 0.20 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 290.00 33.76 2.37 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 50.00 5.82 0.41 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 6.00 0.70 0.05 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 1.00 50.00 0.01 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA A375 (Cell line)