ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 57.00 37.50 0.47 100.0 SNORA7B-201 snoRNA A375 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 1195.00 93.65 9.75 100.0 SNORD14D-201 snoRNA A375 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 1.00 8.33 0.01 100.0 Y_RNA.555-201 misc RNA A375 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 3092.00 92.71 25.24 95.43 MIR25-201 miRNA A375 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 326.00 87.40 2.66 97.02 MIR99B-201 miRNA A375 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 51.00 44.74 0.42 92.73 MIR23B-201 miRNA A375 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 40.00 35.09 0.33 57.14 MIR23B-201 miRNA A375 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 61.00 79.22 0.50 96.83 MIR199B-201 miRNA A375 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 11.00 14.29 0.09 100.0 MIR199B-201 miRNA A375 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 177.00 97.79 1.44 100.0 MIR30B-201 miRNA A375 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 83.00 76.85 0.68 100.0 MIR181D-201 miRNA A375 (Cell line)
ENST00000384857.1 ENST00000384857.1_61_83_+ 61–83 1.00 100.00 0.01 100.0 MIR508-201 miRNA A375 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 4.00 100.00 0.03 100.0 MIR215-201 miRNA A375 (Cell line)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 173.00 1.45 1.41 100.0 MIR181A2-201 miRNA A375 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 13714.00 99.38 111.93 99.78 MIR191-201 miRNA A375 (Cell line)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 1.00 25.00 0.01 33.33 MIR149-201 miRNA A375 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 6.00 15.38 0.05 100.0 MIR181C-201 miRNA A375 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 30.00 76.92 0.24 93.75 MIR181C-201 miRNA A375 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 3.00 100.00 0.02 100.0 MIR194-1-201 miRNA A375 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 34.00 73.91 0.28 77.27 MIR128-2-201 miRNA A375 (Cell line)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 455.00 88.35 3.71 90.1 MIR99A-201 miRNA A375 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 12.00 0.68 0.10 100.0 MIR28-201 miRNA A375 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 1628.00 92.13 13.29 95.54 MIR28-201 miRNA A375 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 30.00 1.70 0.24 90.91 MIR28-201 miRNA A375 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 122.00 76.73 1.00 100.0 MIR183-201 miRNA A375 (Cell line)