ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 12.00 92.31 0.10 100.0 MIR660-201 miRNA A375 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 511.00 28.03 4.17 94.45 MIR125B1-201 miRNA A375 (Cell line)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 1127.00 61.82 9.20 100.0 MIR125B1-201 miRNA A375 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 267.11 8.50 2.18 15.42 MIR182-201 miRNA A375 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 1817.21 57.80 14.83 61.41 MIR182-201 miRNA A375 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 4926.00 73.19 40.21 88.82 MIR100-201 miRNA A375 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 182.00 94.30 1.49 100.0 MIR301A-201 miRNA A375 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 275.00 79.71 2.24 93.22 MIR130A-201 miRNA A375 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 66.00 19.13 0.54 50.77 MIR130A-201 miRNA A375 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 3927.00 99.04 32.05 99.8 MIRLET7F2-201 miRNA A375 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 10.00 62.50 0.08 100.0 MIR652-201 miRNA A375 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1248.00 61.87 10.19 100.0 MIR140-201 miRNA A375 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 134.00 44.67 1.09 68.37 MIR106B-201 miRNA A375 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 10.00 3.33 0.08 100.0 MIR106B-201 miRNA A375 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 23657.00 70.29 193.09 98.29 SNORD83A-201 snoRNA A375 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 8292.00 24.64 67.68 95.1 SNORD83A-201 snoRNA A375 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 7190.00 90.94 58.68 100.0 SNORD41-201 snoRNA A375 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 2.00 1.03 0.02 100.0 MT-TF-201 Mt tRNA A375 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 9.00 4.64 0.07 90.0 MT-TF-201 Mt tRNA A375 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 2.00 1.03 0.02 22.22 MT-TF-201 Mt tRNA A375 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 97.00 12.75 0.79 100.0 MT-TV-201 Mt tRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 234.00 5.89 1.91 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 82.00 2.06 0.67 85.42 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 68.00 1.71 0.56 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 36.00 0.91 0.29 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)