ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 703.49 2.46 5.74 11.1 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 917.00 3.21 7.48 41.08 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 403.91 1.41 3.30 38.1 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 2461.00 8.61 20.09 78.1 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 838.00 2.93 6.84 70.6 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 167.00 0.58 1.36 100.0 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 1802.00 6.30 14.71 73.88 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 828.00 2.90 6.76 48.62 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 618.00 2.16 5.04 55.08 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 121.00 0.42 0.99 100.0 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 56.00 0.20 0.46 100.0 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 687.47 2.40 5.61 69.02 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 4524.91 15.83 36.93 43.17 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 25.00 4.24 0.20 100.0 SNORD104-201 snoRNA A375 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 14.00 2.37 0.11 100.0 SNORD104-201 snoRNA A375 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 2828.00 41.45 23.08 83.32 RNA5SP358-201 rRNA pseudogene A375 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 6.00 0.01 0.05 75.0 RNA5SP145-201 rRNA pseudogene A375 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 2.00 16.67 0.02 100.0 Y_RNA.105-201 misc RNA A375 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 31.00 46.27 0.25 100.0 RNY4P9-201 misc RNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 9.00 0.36 0.07 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 157.00 6.36 1.28 55.48 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 74.00 3.00 0.60 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 114.00 4.62 0.93 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 536.00 21.70 4.37 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 96.00 3.89 0.78 100.0 RNU5B-1-201 snRNA A375 (Cell line)