ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 1121.00 0.63 9.15 71.45 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 1447.00 0.81 11.81 100.0 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 7330.00 4.09 59.83 74.25 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 15129.00 8.44 123.48 98.82 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 1021.00 0.57 8.33 18.87 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 9019.00 5.03 73.61 88.59 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 4950.00 2.76 40.40 100.0 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 1735.09 0.97 14.16 55.35 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 205.00 0.11 1.67 8.75 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 3.00 0.00 0.02 100.0 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 1701.37 0.95 13.89 52.32 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 1155.06 0.64 9.43 56.18 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 22240.00 12.41 181.52 99.2 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 4685.00 2.61 38.24 57.93 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 1315.00 0.73 10.73 71.86 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 187.00 0.10 1.53 83.11 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 6.00 17.14 0.05 100.0 Y_RNA.14-201 misc RNA A375 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 132.00 4.39 1.08 100.0 RNU5E-1-201 snRNA A375 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 4390.00 7.94 35.83 81.13 RNA5SP370-201 rRNA pseudogene A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 3115.00 5.64 25.42 72.83 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 497.00 0.90 4.06 100.0 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 4041.00 7.31 32.98 74.39 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1509.00 2.73 12.32 100.0 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 917.00 3.21 7.48 41.08 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1919.00 6.71 15.66 81.8 RNU5A-1-201 snRNA A375 (Cell line)