ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 15.00 100.00 0.12 100.0 SNORD115-18-201 snoRNA A375 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 428.00 67.19 3.49 95.11 RNY4P27-201 misc RNA A375 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 40.00 6.28 0.33 64.52 RNY4P27-201 misc RNA A375 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 7.00 4.05 0.06 100.0 Y_RNA.136-201 misc RNA A375 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 11.00 100.00 0.09 100.0 SNORD114-25-201 snoRNA A375 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 3.00 30.00 0.02 100.0 Y_RNA.181-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 5.06 0.51 0.04 24.1 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 10.00 1.01 0.08 100.0 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 243.00 24.45 1.98 100.0 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 4.00 0.40 0.03 100.0 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 37.42 3.77 0.31 79.63 RNY1-201 misc RNA A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 1333.92 2.07 10.89 37.02 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 76.00 0.12 0.62 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 455.00 0.71 3.71 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 612.00 0.95 5.00 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 3509.00 5.44 28.64 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 2175.44 3.37 17.76 33.86 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 4645.00 7.20 37.91 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 4015.48 6.22 32.77 60.8 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 231.00 0.36 1.89 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 134.00 27.13 1.09 100.0 Y_RNA.234-201 misc RNA A375 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 318.00 0.53 2.60 100.0 RNA5S9-201 rRNA A375 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 2435.00 5.75 19.87 100.0 RNA5SP141-201 rRNA pseudogene A375 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 113.00 84.33 0.92 100.0 ENST00000364722 snoRNA A375 (Cell line)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 1.00 50.00 0.01 100.0 SNORD115-15-201 snoRNA A375 (Cell line)