ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 51.00 2.96 0.42 100.0 SNHG14-312 lncRNA A375 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 2.00 100.00 0.02 100.0 MEG8-244 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 95.00 0.02 0.78 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 1603.00 0.26 13.08 99.69 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 327.34 0.05 2.67 53.4 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 284.00 0.05 2.32 85.54 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 159223.00 25.44 1299.56 97.54 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 35.00 0.01 0.29 64.81 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 10039.00 1.60 81.94 99.62 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 560.00 0.09 4.57 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 46302.00 7.40 377.91 98.62 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 242.00 0.04 1.98 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 15.00 0.00 0.12 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 185.00 0.03 1.51 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1527.00 0.24 12.46 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 446.00 0.07 3.64 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 2.00 0.00 0.02 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 861.00 0.14 7.03 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 362.00 0.06 2.95 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 68.00 0.01 0.56 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 177264.00 28.32 1446.81 96.97 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 33.00 0.01 0.27 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 131020.00 20.93 1069.37 97.39 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 148.00 0.02 1.21 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 22.00 0.00 0.18 100.0 SNHG1-248 lncRNA A375 (Cell line)