ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 228.00 35.57 1.86 100.0 SNHG14-254 lncRNA A375 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 247.00 22.91 2.02 100.0 SNHG14-261 lncRNA A375 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 563.00 52.23 4.60 89.65 SNHG14-261 lncRNA A375 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 1.00 0.15 0.01 100.0 LIMD1-AS1-204 lncRNA A375 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 274.00 40.77 2.24 91.64 LIMD1-AS1-204 lncRNA A375 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 507.00 61.53 4.14 94.41 MIR99AHG-262 lncRNA A375 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 221.00 26.82 1.80 100.0 MIR99AHG-262 lncRNA A375 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 886.00 79.68 7.23 100.0 SNHG14-270 lncRNA A375 (Cell line)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 33.00 0.22 0.27 100.0 SNHG14-275 lncRNA A375 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 226.00 87.26 1.84 97.84 MIR9-2HG-225 lncRNA A375 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 204.00 33.83 1.67 100.0 SNHG14-278 lncRNA A375 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 124.00 20.56 1.01 95.38 SNHG14-278 lncRNA A375 (Cell line)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 1.00 9.09 0.01 100.0 MEG8-234 lncRNA A375 (Cell line)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 4.00 36.36 0.03 100.0 MEG8-234 lncRNA A375 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 412.00 75.60 3.36 100.0 SNHG17-252 lncRNA A375 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 380.00 21.40 3.10 64.74 SNHG14-288 lncRNA A375 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 1118.00 62.95 9.12 84.12 SNHG14-288 lncRNA A375 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 6.00 66.67 0.05 100.0 MEG8-240 lncRNA A375 (Cell line)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 10.00 2.08 0.08 100.0 SNHG14-303 lncRNA A375 (Cell line)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 1.00 50.00 0.01 100.0 SNHG14-306 lncRNA A375 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 784.00 8.43 6.40 100.0 ENST00000666735 lncRNA A375 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 497.00 5.34 4.06 100.0 ENST00000666735 lncRNA A375 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 4.00 2.34 0.03 100.0 MEG8-242 lncRNA A375 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 358.04 20.77 2.92 24.73 SNHG14-312 lncRNA A375 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 1127.92 65.42 9.21 77.9 SNHG14-312 lncRNA A375 (Cell line)