ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3.00 0.00 0.02 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 28429.00 4.54 232.03 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 197.00 0.03 1.61 72.16 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 275.31 0.04 2.25 44.91 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 16.00 0.00 0.13 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 206.00 0.03 1.68 54.5 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 57.00 0.01 0.47 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 139.00 0.02 1.13 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 2266.00 0.36 18.49 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 14492.00 34.44 118.28 100.0 SNHG14-315 lncRNA A375 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 13942.00 33.14 113.79 97.41 SNHG14-315 lncRNA A375 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 11827.00 28.11 96.53 92.75 SNHG14-315 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 367.00 0.11 3.00 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 98603.53 28.88 804.79 35.03 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 65.00 0.02 0.53 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 66.00 0.02 0.54 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 232853.85 68.21 1900.53 70.59 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 670.00 0.20 5.47 67.27 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 19.00 0.01 0.16 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1974.00 0.58 16.11 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 251.00 0.07 2.05 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.01 50.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3676.00 1.08 30.00 95.36 SNHG5-273 lncRNA A375 (Cell line)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 112.00 7.82 0.91 53.59 SNHG14-323 lncRNA A375 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 6.00 21.43 0.05 100.0 MEG8-251 lncRNA A375 (Cell line)