ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 15466.00 0.99 126.23 99.59 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 183875.00 11.77 1500.77 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 27.00 0.00 0.22 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 13860.00 0.89 113.12 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 185551.00 11.88 1514.44 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1.00 0.00 0.01 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 486.00 0.03 3.97 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 5.00 6.10 0.04 100.0 FTX-219 lncRNA A375 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 48.00 58.54 0.39 84.21 FTX-219 lncRNA A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 50.00 4.83 0.41 47.17 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 286.00 27.61 2.33 93.46 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 80.00 7.72 0.65 50.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 56.00 5.41 0.46 52.83 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 142.00 13.71 1.16 84.02 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 111.00 10.71 0.91 100.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 37.00 3.57 0.30 100.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 83.00 8.01 0.68 100.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 212.00 5.83 1.73 76.26 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 27.00 0.74 0.22 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 87.00 2.39 0.71 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 118.00 3.25 0.96 51.08 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 5.00 0.14 0.04 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 46.00 1.27 0.38 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 962.00 26.46 7.85 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 12.00 0.33 0.10 100.0 ENST00000651540 lncRNA A375 (Cell line)