ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 669.00 2.84 5.46 76.99 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 338.00 1.43 2.76 44.95 SNHG14-224 lncRNA A375 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1575.88 26.56 12.86 65.58 5S_rRNA.20-201 rRNA pseudogene A375 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1266.00 17.93 10.33 100.0 HSPA9-211 retained intron A375 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 3890.00 55.11 31.75 81.95 HSPA9-211 retained intron A375 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 52.00 98.11 0.42 100.0 DNM3OS-205 lncRNA A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 101.00 0.01 0.82 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 2709.00 0.17 22.11 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 338.00 0.02 2.76 34.81 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 6438.00 0.41 52.55 99.34 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 325.00 0.02 2.65 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 18.00 0.00 0.15 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1145.00 0.07 9.35 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1077628.00 68.97 8795.47 99.42 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 269.00 0.02 2.20 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2594.00 0.17 21.17 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2657.00 0.17 21.69 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 331.00 0.02 2.70 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 12279.00 0.79 100.22 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 60.00 0.00 0.49 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 36.00 0.00 0.29 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 465.00 0.03 3.80 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 311.00 0.02 2.54 55.83 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1261.00 0.08 10.29 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 29582.00 1.89 241.44 100.0 GAS5-230 retained intron A375 (Cell line)