ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 23.00 0.63 0.19 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 333.00 9.16 2.72 60.77 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 89.00 2.45 0.73 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 679.00 18.67 5.54 75.95 ENST00000651540 lncRNA A375 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 909.00 7.63 7.42 100.0 MIRLET7A1HG-203 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 107015.00 84.90 873.44 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 7.00 0.01 0.06 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 43.00 0.03 0.35 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 81.00 0.06 0.66 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 6735.00 5.34 54.97 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 10038.00 7.96 81.93 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 8.00 0.13 0.07 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 2371.00 39.79 19.35 97.21 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 9.00 0.15 0.07 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 561.00 9.41 4.58 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 542.00 9.10 4.42 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1838.00 30.84 15.00 99.14 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 139.00 2.42 1.13 37.98 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1080.00 18.81 8.81 100.0 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 336.00 5.85 2.74 66.4 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 803.00 13.99 6.55 100.0 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 80.00 18.18 0.65 88.89 LINC01962-202 lncRNA A375 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 162.00 36.82 1.32 100.0 LINC01962-202 lncRNA A375 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 45.00 10.23 0.37 100.0 LINC01962-202 lncRNA A375 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 916.00 33.22 7.48 98.81 SNHG14-241 lncRNA A375 (Cell line)