ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 48.00 0.55 0.39 90.57 SNORD53B-201 snoRNA A375 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 470.00 94.95 3.84 100.0 ENST00000578036 lncRNA A375 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2957.00 91.98 24.13 100.0 RPL23A-207 protein coding A375 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 38.00 95.00 0.31 100.0 MIR744-201 miRNA A375 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 18.00 90.00 0.15 100.0 MIR378C-201 miRNA A375 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 1.00 33.33 0.01 50.0 MIR142HG-201 lncRNA A375 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 487.00 7.12 3.97 100.0 SNORD3C-201 snoRNA A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 221.98 0.07 1.81 58.72 RPL23A-208 retained intron A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 146.11 0.05 1.19 50.04 RPL23A-208 retained intron A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 159970.00 51.33 1305.66 68.47 RPL23A-208 retained intron A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 149823.00 48.07 1222.84 89.83 RPL23A-208 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1560.00 0.60 12.73 20.25 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2459.00 0.95 20.07 15.45 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 268.00 0.10 2.19 100.0 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 167788.00 64.98 1369.47 99.18 RPL17-211 retained intron A375 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 83344.00 32.28 680.24 98.89 RPL17-211 retained intron A375 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1835.00 5.59 14.98 100.0 RPL17-214 retained intron A375 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 11562.83 35.20 94.37 42.93 RPL17-214 retained intron A375 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 18777.84 57.16 153.26 62.81 RPL17-214 retained intron A375 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 20.00 0.00 0.16 100.0 SNORD43-201 snoRNA A375 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 431527.00 99.50 3522.07 99.86 SNORD43-201 snoRNA A375 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 125.00 0.03 1.02 100.0 SNORD43-201 snoRNA A375 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 7.00 63.64 0.06 100.0 MIR151B-201 miRNA A375 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 151.00 2.01 1.23 100.0 SNORD3A-201 snoRNA A375 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1521.00 82.84 12.41 100.0 SNORD92-201 snoRNA A375 (Cell line)