ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 118.00 100.00 0.96 100.0 TEKT4P2-201 transcribed unprocessed pseudogene A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 29752.00 89.63 242.83 97.32 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 382.00 1.15 3.12 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 28.00 0.08 0.23 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 3.00 0.01 0.02 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 337.00 1.02 2.75 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 94.00 4.84 0.77 100.0 ENST00000563103 lncRNA A375 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 7427.00 86.13 60.62 100.0 RPL4-207 retained intron A375 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 90.00 1.04 0.73 100.0 RPL4-207 retained intron A375 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 429.00 22.83 3.50 83.95 ENST00000565336 lncRNA A375 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 664.00 35.34 5.42 84.37 ENST00000565336 lncRNA A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 170.00 0.18 1.39 100.0 RBMX-210 retained intron A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 219.00 0.23 1.79 100.0 RBMX-210 retained intron A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 133.00 0.14 1.09 100.0 RBMX-210 retained intron A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 91134.00 96.19 743.82 98.77 RBMX-210 retained intron A375 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 877.00 56.04 7.16 100.0 RPL4-214 retained intron A375 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 199.00 12.72 1.62 100.0 RPL4-214 retained intron A375 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 331.87 28.98 2.71 50.06 POLG-DT-202 lncRNA A375 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 470.87 41.12 3.84 80.22 POLG-DT-202 lncRNA A375 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 56.00 4.89 0.46 100.0 POLG-DT-202 lncRNA A375 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 4.00 1.07 0.03 100.0 ENST00000570843 lncRNA A375 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 36.00 9.60 0.29 100.0 ENST00000570843 lncRNA A375 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 3290.00 99.37 26.85 99.58 MIR22HG-212 lncRNA A375 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 5.00 0.06 0.04 9.43 SNORD53B-201 snoRNA A375 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 5736.00 65.70 46.82 66.53 SNORD53B-201 snoRNA A375 (Cell line)