ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 281.00 43.91 2.29 100.0 NSRP1-214 protein coding A375 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 217.00 33.91 1.77 81.89 NSRP1-214 protein coding A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 1169.00 45.66 9.54 100.0 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 147.00 5.74 1.20 76.96 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 546.00 21.33 4.46 94.14 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 46.00 1.80 0.38 75.41 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 31.00 1.21 0.25 65.96 MIR23AHG-201 lncRNA A375 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 1.00 20.00 0.01 100.0 ODAD3-204 nonsense mediated decay A375 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1706.00 10.57 13.92 100.0 VMP1-217 retained intron A375 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 149.00 0.92 1.22 100.0 VMP1-217 retained intron A375 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 11945.00 73.98 97.49 85.98 VMP1-217 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 232.00 0.03 1.89 100.0 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 479490.12 54.13 3913.54 58.1 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 439937.85 49.66 3590.72 50.02 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1870.00 0.21 15.26 78.18 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 269.00 0.03 2.20 100.0 C19orf48P-203 retained intron A375 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 4.00 0.00 0.03 100.0 C19orf48P-203 retained intron A375 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 129.00 26.93 1.05 100.0 RPS11-206 retained intron A375 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 279.00 58.25 2.28 100.0 RPS11-206 retained intron A375 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 17.00 85.00 0.14 94.44 CARMN-209 lncRNA A375 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 375.00 45.96 3.06 100.0 ENST00000602478 lncRNA A375 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 5.00 8.77 0.04 100.0 PPFIA1P1-201 processed pseudogene A375 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2.00 100.00 0.02 100.0 SNORD114-21-201 snoRNA A375 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 280.00 99.64 2.29 100.0 MIR98-201 miRNA A375 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 19.00 82.61 0.16 100.0 MIR15A-201 miRNA A375 (Cell line)