ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1258.00 85.52 10.27 100.0 RPS3A-206 retained intron A375 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 4109.00 97.53 33.54 100.0 COX7C-203 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 5.00 0.01 0.04 100.0 RACK1-229 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 25.00 0.06 0.20 56.82 RACK1-229 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 25907.48 66.09 211.45 69.06 RACK1-229 protein coding A375 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 11491.96 29.32 93.80 29.93 RACK1-229 protein coding A375 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 43370.00 30.43 353.98 68.16 RACK1-230 retained intron A375 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 97355.00 68.30 794.60 77.0 RACK1-230 retained intron A375 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 101.00 12.02 0.82 100.0 RNA5SP486-201 rRNA pseudogene A375 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 70.00 93.33 0.57 100.0 SCARNA5-201 scaRNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 205.00 0.46 1.67 91.52 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 12.00 0.03 0.10 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 17.00 0.04 0.14 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 173.00 0.39 1.41 59.66 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 1947.00 4.39 15.89 95.11 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 734.00 1.65 5.99 89.08 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 275.00 0.62 2.24 91.36 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 106.00 0.24 0.87 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 271.00 0.61 2.21 73.05 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 35.00 0.08 0.29 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 34606.00 78.02 282.45 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 178.00 80.18 1.45 89.9 MIR3142HG-201 lncRNA A375 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 3696.00 75.82 30.17 100.0 SNHG6-204 retained intron A375 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 366.00 9.77 2.99 100.0 MIR151A-201 miRNA A375 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 3007.00 80.27 24.54 90.63 MIR151A-201 miRNA A375 (Cell line)