ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 250.00 95.06 2.04 100.0 DENND3-221 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 10.00 0.00 0.08 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 13.00 0.00 0.11 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 7.00 0.00 0.06 77.78 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 435.00 0.12 3.55 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 131.00 0.04 1.07 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 611.00 0.17 4.99 70.72 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 2.00 0.00 0.02 22.22 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 8.00 0.00 0.07 66.67 WDR74-204 protein coding A375 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 27616.00 82.94 225.40 100.0 HSPA8-211 retained intron A375 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 2.00 1.16 0.02 100.0 SCARNA9-201 lncRNA A375 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 4381.00 1.83 35.76 100.0 TAF1D-215 retained intron A375 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 229426.00 96.02 1872.55 100.0 TAF1D-215 retained intron A375 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 84.00 1.75 0.69 100.0 HSPA8-215 retained intron A375 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 4136.00 86.29 33.76 100.0 HSPA8-215 retained intron A375 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 32.00 0.67 0.26 100.0 HSPA8-215 retained intron A375 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 192.00 29.49 1.57 100.0 RPS2-215 retained intron A375 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 5612.00 88.83 45.80 90.08 ENST00000548801 lncRNA A375 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 570.00 44.53 4.65 100.0 ENST00000554988 lncRNA A375 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 188.00 14.69 1.53 100.0 ENST00000554988 lncRNA A375 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 11.00 0.86 0.09 100.0 ENST00000554988 lncRNA A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 2773.00 60.90 22.63 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 1332.00 29.26 10.87 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 166.00 3.65 1.35 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1.00 0.02 0.01 100.0 SNHG14-220 retained intron A375 (Cell line)