ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 62101.00 63.66 506.86 99.3 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2.00 0.00 0.02 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 28281.00 28.99 230.83 94.01 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 31.00 0.03 0.25 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1917.00 1.97 15.65 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 330.00 0.34 2.69 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 7072.00 64.09 57.72 70.17 RPL7A-207 protein coding CDS not defined A375 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 54.00 0.49 0.44 100.0 RPL7A-207 protein coding CDS not defined A375 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 8.00 0.07 0.07 100.0 RPL7A-207 protein coding CDS not defined A375 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 493.00 12.75 4.02 100.0 RN7SL2-201 misc RNA A375 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 93.00 2.40 0.76 33.94 RN7SL2-201 misc RNA A375 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 30673.00 94.81 250.35 98.48 NOP56-217 protein coding CDS not defined A375 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 137.00 0.42 1.12 99.28 NOP56-217 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 3615.00 1.99 29.51 79.49 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 22.00 0.01 0.18 100.0 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 493.00 0.27 4.02 100.0 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 908.00 0.50 7.41 100.0 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 12.00 0.01 0.10 38.71 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 19.00 0.01 0.16 61.29 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 167616.00 92.29 1368.06 97.5 RABGGTB-213 protein coding CDS not defined A375 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 119.00 1.03 0.97 100.0 GNL3-211 retained intron A375 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 11055.00 95.96 90.23 100.0 GNL3-211 retained intron A375 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 32.00 3.02 0.26 100.0 RPL5-205 retained intron A375 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 799.00 75.52 6.52 100.0 RPL5-205 retained intron A375 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 122.00 24.21 1.00 100.0 ZBED9-AS1-201 lncRNA A375 (Cell line)