ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 845.00 74.91 6.90 100.0 SNORD70B-201 snoRNA A375 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 77.00 32.77 0.63 83.7 RNY4P18-201 misc RNA A375 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 1904.00 51.05 15.54 100.0 SNORD90-201 snoRNA A375 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1273.00 34.13 10.39 73.8 SNORD90-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 84.00 0.25 0.69 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 83.00 0.25 0.68 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 32444.00 97.77 264.80 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 41.00 0.12 0.33 100.0 SNORD69-201 snoRNA A375 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 901.00 55.93 7.35 89.47 SNORD70-201 snoRNA A375 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 4654.00 83.21 37.99 89.69 B4GALNT2-202 protein coding A375 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 96.00 1.72 0.78 100.0 B4GALNT2-202 protein coding A375 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 28.00 82.35 0.23 100.0 NDE1-202 protein coding A375 (Cell line)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 3.00 23.08 0.02 100.0 MIR887-201 miRNA A375 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 12466.00 85.51 101.75 100.0 SNORD111-201 snoRNA A375 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1481.00 52.93 12.09 70.36 SNORD88A-201 snoRNA A375 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 13.00 92.86 0.11 100.0 MIR548K-201 miRNA A375 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 22.00 61.11 0.18 100.0 MIR320B2-201 miRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 45.00 0.30 0.37 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 14454.00 96.48 117.97 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 101.00 0.67 0.82 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 27.00 0.18 0.22 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 120.00 21.62 0.98 100.0 SNORD111B-201 snoRNA A375 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 96.00 41.74 0.78 100.0 RNU2-36P-201 snRNA A375 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 4.00 1.74 0.03 100.0 RNU2-36P-201 snRNA A375 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 67742.00 91.00 552.90 93.27 SNORD19C-201 snoRNA A375 (Cell line)