ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 104.00 0.14 0.85 100.0 SNORD19C-201 snoRNA A375 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 142.00 0.07 1.16 100.0 SNORD12B-201 snoRNA A375 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 186177.00 89.59 1519.55 93.3 SNORD12B-201 snoRNA A375 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 3814.00 1.84 31.13 100.0 SNORD12B-201 snoRNA A375 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 17.00 31.48 0.14 100.0 Y_RNA.609-201 misc RNA A375 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 8.00 22.22 0.07 100.0 Y_RNA.612-201 misc RNA A375 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 19763.00 95.92 161.30 98.95 SNORD71-201 snoRNA A375 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 415.00 2.01 3.39 100.0 SNORD71-201 snoRNA A375 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 6.00 0.03 0.05 100.0 SNORD71-201 snoRNA A375 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 37.00 6.48 0.30 42.05 MIR194-2HG-201 lncRNA A375 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 526.00 92.12 4.29 95.64 MIR194-2HG-201 lncRNA A375 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 44.00 11.43 0.36 100.0 LINC01783-201 lncRNA A375 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 67.00 94.37 0.55 100.0 RPS7P15-201 processed pseudogene A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 7.00 2.41 0.06 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 1.00 0.34 0.01 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 14.00 4.81 0.11 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 129.00 44.33 1.05 91.49 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 24.00 8.25 0.20 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 372.00 99.73 3.04 100.0 MRPL32-203 nonsense mediated decay A375 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 551.00 97.01 4.50 100.0 ENST00000436739 lncRNA A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 110.00 4.19 0.90 100.0 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 205.00 7.81 1.67 38.46 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 20.00 0.76 0.16 100.0 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 12.00 0.46 0.10 100.0 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 17.00 0.65 0.14 30.36 TMEM107-204 protein coding A375 (Cell line)