ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 25.00 5.41 0.20 100.0 MT-TS2-201 Mt tRNA A375 (Cell line)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 35.00 18.04 0.29 100.0 MT-TL2-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 70.00 0.01 0.57 100.0 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 172.00 0.03 1.40 100.0 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 18.00 0.00 0.15 100.0 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 204.00 0.04 1.67 76.12 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 16.00 0.00 0.13 12.21 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 115.00 0.02 0.94 93.5 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 452690.00 91.33 3694.80 94.47 MT-TE-201 Mt tRNA A375 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 57.00 80.28 0.47 100.0 MIR196A1-201 miRNA A375 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 116.00 5.46 0.95 100.0 MT-RNR1-201 Mt rRNA A375 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 112.00 5.27 0.91 100.0 MT-RNR1-201 Mt rRNA A375 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 17.00 41.46 0.14 100.0 MIR454-201 miRNA A375 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 3.00 33.33 0.02 100.0 MIR501-201 miRNA A375 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 139.00 88.54 1.13 100.0 MIR769-201 miRNA A375 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 27.00 72.97 0.22 100.0 KRTAP19-1-201 protein coding A375 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 23.00 95.83 0.19 100.0 MIR301B-201 miRNA A375 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 93.00 54.39 0.76 73.81 RNU1-82P-201 snRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 5.00 1.28 0.04 100.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 50.00 12.76 0.41 100.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 100.00 25.51 0.82 100.0 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 27.00 6.89 0.22 36.99 SNORD66-201 snoRNA A375 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 78.00 88.64 0.64 100.0 U3.17-201 snoRNA A375 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 170.00 34.27 1.39 100.0 SNORD17-201 snoRNA A375 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 788.00 46.08 6.43 100.0 SNORD72-201 snoRNA A375 (Cell line)