ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 22.00 0.07 0.07 73.33 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 10.00 0.03 0.03 71.43 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 5886.64 19.05 19.41 67.01 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 4118.00 13.33 13.57 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 211.00 0.68 0.70 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 508.00 1.64 1.67 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 2.33 0.01 0.01 58.22 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 452.00 3.26 1.49 100.0 U2.6-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 71.00 0.54 0.23 35.5 ENST00000619323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 12587.00 95.61 41.49 98.45 ENST00000619323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 424.00 27.69 1.40 100.0 SCARNA4-202 scaRNA esophagus squamous epithelium (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 474.00 10.00 1.56 100.0 ENST00000625572 miRNA esophagus squamous epithelium (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 3753.00 88.98 12.37 100.0 ENST00000628177 snoRNA esophagus squamous epithelium (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 31397.00 96.24 103.50 100.0 ENST00000630615 snoRNA esophagus squamous epithelium (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 137.00 50.37 0.45 100.0 DMRT2-209 protein coding esophagus squamous epithelium (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 27.00 9.93 0.09 100.0 DMRT2-209 protein coding esophagus squamous epithelium (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 275.00 17.71 0.91 100.0 SNORD98-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1001.00 64.46 3.30 100.0 SNORD98-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 51301.47 51.93 169.11 54.01 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 9.52 0.01 0.03 50.11 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 2.00 0.00 0.01 100.0 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 7.67 0.01 0.03 40.36 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 321.00 45.08 1.06 100.0 MEG8-222 lncRNA esophagus squamous epithelium (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 42.00 5.90 0.14 100.0 MEG8-222 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 2682.00 45.84 8.84 98.6 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)