ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3226.00 52.92 10.63 90.21 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 727.00 6.16 2.40 100.0 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1867.00 15.81 6.15 89.76 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 3550.00 30.06 11.70 85.69 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2205.00 18.67 7.27 87.81 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1447.00 12.25 4.77 73.19 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 1795.00 72.00 5.92 100.0 ODAD3-204 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 3794.00 4.09 12.51 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 792.00 0.85 2.61 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 69466.00 74.80 228.99 82.19 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 804.00 0.04 2.65 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1144776.52 52.62 3773.72 56.6 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 987800.08 45.41 3256.25 45.87 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 7809.00 0.36 25.74 90.96 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 322.00 0.01 1.06 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 14.00 0.00 0.05 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 885.00 37.06 2.92 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1226.00 51.34 4.04 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1069866.00 81.10 3526.78 82.14 CARMN-209 lncRNA esophagus squamous epithelium (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2040.00 51.19 6.72 100.0 ENST00000602478 lncRNA esophagus squamous epithelium (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 1173.00 51.67 3.87 100.0 PPFIA1P1-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 280.00 53.64 0.92 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 195.00 37.36 0.64 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 12.00 48.00 0.04 100.0 SNORD115-40-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2926.00 98.42 9.65 100.0 MIR98-201 miRNA esophagus squamous epithelium (Tissue)