ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 38.00 8.62 0.19 100.0 SNHG14-254 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 94.00 6.65 0.47 100.0 SNHG14-261 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 732.00 51.80 3.64 82.81 SNHG14-261 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 182.00 0.98 0.90 100.0 LIMD1-AS1-204 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 6965.00 37.61 34.63 100.0 LIMD1-AS1-204 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 2221.00 11.99 11.04 89.7 LIMD1-AS1-204 lncRNA esophagus squamous epithelium (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 4972.00 62.30 24.72 83.17 MIR99AHG-262 lncRNA esophagus squamous epithelium (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 817.00 10.24 4.06 100.0 MIR99AHG-262 lncRNA esophagus squamous epithelium (Tissue)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 18.00 56.25 0.09 100.0 SNHG14-270 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 21.00 0.79 0.10 100.0 SNHG14-275 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 17.00 12.23 0.08 89.47 MIR9-2HG-225 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 58.00 38.67 0.29 100.0 MEG8-233 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 24.00 16.00 0.12 100.0 MEG8-233 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 30.00 9.90 0.15 100.0 SNHG14-278 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 18.00 5.94 0.09 100.0 SNHG14-278 lncRNA esophagus squamous epithelium (Tissue)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 118.00 45.04 0.59 100.0 MEG8-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 33.00 12.60 0.16 100.0 MEG8-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 6162.00 94.32 30.64 100.0 SNHG17-252 lncRNA esophagus squamous epithelium (Tissue)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 324.00 8.69 1.61 60.56 SNHG14-288 lncRNA esophagus squamous epithelium (Tissue)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 3234.00 86.77 16.08 98.6 SNHG14-288 lncRNA esophagus squamous epithelium (Tissue)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 95.00 52.78 0.47 100.0 MEG8-240 lncRNA esophagus squamous epithelium (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 4.00 5.56 0.02 100.0 SNHG14-306 lncRNA esophagus squamous epithelium (Tissue)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 36.00 50.00 0.18 100.0 SNHG14-306 lncRNA esophagus squamous epithelium (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 237.00 5.36 1.18 100.0 ENST00000666735 lncRNA esophagus squamous epithelium (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 104.00 2.35 0.52 100.0 ENST00000666735 lncRNA esophagus squamous epithelium (Tissue)