ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 188.00 0.10 0.93 100.0 ENST00000651540 lncRNA esophagus squamous epithelium (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 8727.00 4.47 43.39 80.96 ENST00000651540 lncRNA esophagus squamous epithelium (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 2279.00 1.29 11.33 100.0 MIRLET7A1HG-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 387.00 88.97 1.92 100.0 MEG8-225 lncRNA esophagus squamous epithelium (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 427722.00 94.72 2126.73 100.0 SNHG29-232 lncRNA esophagus squamous epithelium (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 648.00 0.14 3.22 100.0 SNHG29-232 lncRNA esophagus squamous epithelium (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 520.00 0.12 2.59 100.0 SNHG29-232 lncRNA esophagus squamous epithelium (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 8.00 0.00 0.04 100.0 SNHG29-232 lncRNA esophagus squamous epithelium (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 9169.00 2.03 45.59 100.0 SNHG29-232 lncRNA esophagus squamous epithelium (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 8991.00 1.99 44.71 100.0 SNHG29-232 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 33.00 0.51 0.16 100.0 SNHG14-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 3247.00 50.40 16.14 94.03 SNHG14-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 24.00 0.37 0.12 100.0 SNHG14-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 76.00 1.18 0.38 100.0 SNHG14-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1270.00 19.71 6.31 100.0 SNHG14-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 451.00 7.00 2.24 93.76 SNHG14-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 523.00 6.74 2.60 17.43 ENST00000655317 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 157.00 2.02 0.78 100.0 ENST00000655317 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 4574.00 58.91 22.74 89.41 ENST00000655317 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 198.00 2.55 0.98 100.0 ENST00000655317 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 368.00 1.06 1.83 47.06 LINC01962-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 27310.00 78.57 135.79 100.0 LINC01962-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 972.00 2.80 4.83 100.0 LINC01962-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 1998.00 65.19 9.93 97.85 SNHG14-241 lncRNA esophagus squamous epithelium (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 941.00 94.38 4.68 100.0 MEG8-228 lncRNA esophagus squamous epithelium (Tissue)