ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 170.00 0.15 0.85 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 20.00 0.21 0.10 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 7.00 0.07 0.03 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 5754.00 60.68 28.61 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 602.00 25.28 2.99 100.0 RPS2-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 104520.00 82.29 519.70 83.61 ENST00000548801 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 520.00 11.51 2.59 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1523.00 33.70 7.57 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 385.00 8.52 1.91 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 52.00 0.78 0.26 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 5931.00 88.89 29.49 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 328.00 4.92 1.63 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 76.00 1.14 0.38 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2212.00 99.59 11.00 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 3.00 0.01 0.01 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 594.00 1.02 2.95 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 780.00 1.34 3.88 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 234.00 0.40 1.16 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 53025.00 91.00 263.65 97.1 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 9.00 0.04 0.04 100.0 ENST00000563103 lncRNA esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 631.00 2.83 3.14 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 18628.00 83.51 92.62 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1800.00 5.40 8.95 66.03 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 28052.00 84.23 139.48 96.24 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1006.00 1.08 5.00 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)