ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 72.00 0.08 0.36 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 818.00 0.88 4.07 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 64292.00 69.16 319.67 71.82 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 3343.00 47.57 16.62 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 2250.00 32.02 11.19 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 5102.53 26.90 25.37 50.27 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 6407.52 33.79 31.86 76.14 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 463.00 2.44 2.30 100.0 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 5.00 0.12 0.02 100.0 ENST00000570843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 221.00 5.52 1.10 100.0 ENST00000570843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 580.00 72.86 2.88 100.0 MIR497HG-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 36301.00 97.73 180.50 98.37 MIR22HG-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 946.00 1.28 4.70 65.42 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 66121.00 89.81 328.77 92.69 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 500.00 0.68 2.49 34.58 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 36.00 30.00 0.18 100.0 ENST00000578036 lncRNA esophagus squamous epithelium (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2227.00 90.20 11.07 100.0 RPL23A-207 protein coding esophagus squamous epithelium (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 760.00 96.20 3.78 100.0 MIR744-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 139.00 63.76 0.69 100.0 MIR378C-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3469.00 71.96 17.25 79.91 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 7.00 0.15 0.03 100.0 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 192.00 3.98 0.95 11.07 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 3.00 0.03 0.01 100.0 SNORD3C-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 156.30 0.08 0.78 56.63 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 116.89 0.06 0.58 50.38 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)